custodian.lobster.jobs module

This module implements jobs for Lobster runs.

class custodian.lobster.jobs.LobsterJob(lobster_cmd: str, output_file: str = ‘lobsterout’, stderr_file: str = ‘std_err_lobster.txt’, gzipped: bool = True, add_files_to_gzip=[], backup: bool = True)

Bases: Job

Runs the Lobster Job

• Parameters
  • lobster_cmd – command to run lobster
  • output_file – usually lobsterout
  • stderr_file – standard output
  • gzipped – if True, Lobster files and add_files_to_gzip will be gzipped
  • add_files_to_gzip – list of files that should be gzipped
  • backup – if True, lobsterin will be copied to lobsterin.orig

postprocess()

will gzip relevant files (won’t gzip custodian.json and other output files from the cluster)

run()

runs the job

setup()

will backup lobster input files